Bio::LiveSeq::ChainI(3User Contributed Perl DocumentatiBio::LiveSeq::ChainI(3)NAMEBio::LiveSeq::ChainI - Double linked chain data structure
SYNOPSIS
#documentation needed
DESCRIPTION
This class generates and manipulates generic double linked list, chain,
that can be used to manage biological sequences.
The advantages over strings or plain arrays is the ease of tracking
changes (mutations) in the elements (sequence). The other side of the
coin is that these structures need consideraly more memory, but that is
cheap and constantly inceasing resource in computers.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track
the bugs and their resolution. Bug reports can be submitted via the
web:
http://bugzilla.open-bio.org/
AUTHOR - Joseph A.L. Insana
Email: Insana@ebi.ac.uk, jinsana@gmx.net
APPENDIX
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
new
Title : new
Usage : $chain = Bio::LiveSeq::ChainI->new(-string => "thequickbrownfoxjumpsoverthelazydog",
-offset => 3 );
OR $chain = Bio::LiveSeq::ChainI->new(-array => \@array,
-offset => 3 );
Function: generates a new Bio::LiveSeq:ChainI
Returns : a new Chain
Args : string
OR arrayreference
AND optional offset to create element labels
perl v5.14.1 2011-07-22 Bio::LiveSeq::ChainI(3)